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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_17402138_17405756_R

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
17402138 - 17405756
Intron Length:
3619

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
GAA|GCCCTTGAA
5'SS Class:
weak_major
3'SS Sequence:
AATAGCTATAAAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
AAATAAT
U12 Branch Point Sequence:
TTTTCCGTAAGA
Flanking Amino Acid:
HSPLALQPRRKSRGFGAGWG
Intron Amino Acid Position:
12

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
53.9
0.09
1.3
52.5
41.5
Major BPS
71.2
0.53
1
70.3
31.9
Major PPT
52.1
0.05
1.2
49.6
42.5
Minor 5ss
17.8
-3.7
3.7
22.3
30.3
Minor BPS
64.2
0.44
2.3
83.03
38.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019991
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000048100
17401915 - 17405791
3877