Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_17451923_17452320_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

17451923 - 17452320

Intron Length:

398

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ACG|GTAAGACTT

5'SS Class:

strong_major

3'SS Sequence:

TTTGTTTTCTTAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTCTAAT

U12 Branch Point Sequence:

GTCATTCTAATT

Flanking Amino Acid:

LVGPNGAGKTTIIECLKYVS

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.78

75.8

Major BPS

94.5

1.11

0.6

92.2

14.6

Major PPT

84.8

0.78

0.7

84.8

Minor 5ss

38.4

-1.3

3.4

58.3

45.6

Minor BPS

49.1

0.01

1.7

65.29

39.8

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000011856

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000039086

17440000 - 17471328

31329

ENSAPLT00000012392

17451794 - 17479574

27781