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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_17456582_17457138_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
17456582 - 17457138
Intron Length:
557

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGGATT
5'SS Class:
strong_major
3'SS Sequence:
TCACTTCTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
TTATTGTTCACT
Flanking Amino Acid:
RDTETANHLMREFAQKEAMK
Intron Amino Acid Position:
416

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.8
0.84
0.9
84.3
33.3
Major BPS
83
0.82
0.8
82
24.9
Major PPT
83.1
0.74
0.8
80.7
31
Minor 5ss
38.3
-1.3
3.4
54.5
43.9
Minor BPS
52.2
0.15
2.4
80
42.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000011856
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039086
17440000 - 17471328
31329
ENSAPLT00000012392
17451794 - 17479574
27781