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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_17471291_17479470_F

Intron Information:

Intron Rank:
25
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
17471291 - 17479470
Intron Length:
8180

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGT|GTCAGCTCC
5'SS Class:
weak_major
3'SS Sequence:
CTCTACCTGGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CGCTGAA
U12 Branch Point Sequence:
TCTCCTCTACCT
Flanking Amino Acid:
DQCSEIMKCSSSFRPDR*
Intron Amino Acid Position:
1304

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
52.5
0.06
1.4
50.6
41.6
Major BPS
54.6
0.12
1.1
46.7
38.9
Major PPT
69.8
0.45
1
65.3
35.9
Minor 5ss
42.5
-0.8
2.8
53.1
43.6
Minor BPS
50.5
0.09
2
73.75
43.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000011856
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012392
17451794 - 17479574
27781