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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_17479575_17480142_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
17479575 - 17480142
Intron Length:
568

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAATACT
5'SS Class:
strong_major
3'SS Sequence:
GTCCTTTCTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCTAAT
U12 Branch Point Sequence:
ACAGCTTTCACT
Flanking Amino Acid:
RIQQLNTGVQVPCNDTRVAQ
Intron Amino Acid Position:
110

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.6
0.91
0.8
86.8
27.8
Major BPS
81.9
0.79
0.9
80.1
30
Major PPT
81.1
0.7
0.8
72.8
37.5
Minor 5ss
37.7
-1.4
2.9
52.3
44.3
Minor BPS
50.8
0.11
1.9
66.41
44.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000011856
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022298
17478649 - 17482408
3760