About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_17485213_17486586_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
17485213 - 17486586
Intron Length:
1374

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGACGG
5'SS Class:
strong_major
3'SS Sequence:
CATCTTCTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTAAA
U12 Branch Point Sequence:
AGTTTCTAAAAA
Flanking Amino Acid:
NVTNVFAGNETGTDMELLCK
Intron Amino Acid Position:
62

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.1
0.88
0.9
66.4
45.1
Major BPS
85.3
0.88
0.8
84.2
21.8
Major PPT
81.9
0.72
0.8
73.1
36.9
Minor 5ss
31.4
-2.1
3
39.3
45.9
Minor BPS
56.5
0.2
1.8
67.49
38.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000011854
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012327
17484823 - 17486989
2167