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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_17491238_17491746_R

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
17491238 - 17491746
Intron Length:
509

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAAGAAT
5'SS Class:
major
3'SS Sequence:
GCTCTCCAAACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGGTTAT
U12 Branch Point Sequence:
TGCTCTCCAAAC
Flanking Amino Acid:
KGRSRPKTGRRKRSAKPGAV
Intron Amino Acid Position:
691

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.8
0.68
0.9
77.1
32.7
Major BPS
66.2
0.4
1.3
57.4
49.1
Major PPT
64.3
0.32
1
58.8
36.2
Minor 5ss
27.8
-2.5
3.2
38.7
46.6
Minor BPS
46
-0.3
1.9
57.5
40.9

Associated Gene:

Gene:
KIF3A
Ensembl Gene ID:
ENSAPLG00000011529
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012166
17491189 - 17505868
14680