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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_17491872_17492073_R

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
17491872 - 17492073
Intron Length:
202

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAT|GTGAGTGGC
5'SS Class:
major
3'SS Sequence:
TCTTTCCCTTTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTGAT
U12 Branch Point Sequence:
AGGTTCTGATGT
Flanking Amino Acid:
TPVLDKKEKDPFEVDLSHVY
Intron Amino Acid Position:
650

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78
0.66
1
68.7
36.5
Major BPS
91.3
1.03
0.7
79.6
35.6
Major PPT
83.6
0.76
0.6
82.1
22.8
Minor 5ss
30
-2.3
3.2
39
39.8
Minor BPS
44.8
-0.3
1.9
59.42
43.8

Associated Gene:

Gene:
KIF3A
Ensembl Gene ID:
ENSAPLG00000011529
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012166
17491189 - 17505868
14680