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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_17493095_17493804_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
17493095 - 17493804
Intron Length:
710

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTCAGTGTC
5'SS Class:
strong_major
3'SS Sequence:
TGTTTGTCTGTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTCAA
U12 Branch Point Sequence:
CCCTCCTCAAAT
Flanking Amino Acid:
WTMLMAAKSEMADLQQEHQR
Intron Amino Acid Position:
567

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82
0.76
1.2
80.7
33.6
Major BPS
73.1
0.58
1
73.8
32.3
Major PPT
78.9
0.65
0.9
73.9
36.8
Minor 5ss
32.7
-2
3.2
43.9
43.8
Minor BPS
57
0.3
1.8
69.15
47.4

Associated Gene:

Gene:
KIF3A
Ensembl Gene ID:
ENSAPLG00000011529
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012166
17491189 - 17505868
14680