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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_17494398_17495090_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
17494398 - 17495090
Intron Length:
693

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCA|GTGAGTGTC
5'SS Class:
major
3'SS Sequence:
CCTGTCTCTCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTCCAC
U12 Branch Point Sequence:
TCCACTCTACCT
Flanking Amino Acid:
EKREKDLLKAQQEHQTLLEK
Intron Amino Acid Position:
469

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.2
0.55
1
69.8
34.9
Major BPS
67.4
0.43
1.3
78.4
35.2
Major PPT
74.2
0.54
0.8
65.7
36.1
Minor 5ss
34
-1.8
3.4
49.1
41.3
Minor BPS
46.8
-0.1
2
64.65
46

Associated Gene:

Gene:
KIF3A
Ensembl Gene ID:
ENSAPLG00000011529
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012166
17491189 - 17505868
14680