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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_174993_175682_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
174993 - 175682
Intron Length:
690

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGGGCG
5'SS Class:
strong_major
3'SS Sequence:
CTTCTCACTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTCAC
U12 Branch Point Sequence:
TCTACTCTGATT
Flanking Amino Acid:
YLAINITNGEEVAVKLESQK
Intron Amino Acid Position:
42

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.8
0.89
0.9
70.5
38.9
Major BPS
85
0.87
0.8
85.6
23
Major PPT
80.3
0.68
0.8
74.3
29.2
Minor 5ss
29.5
-2.3
3.4
38.5
46.7
Minor BPS
52.8
0.17
1.7
72.11
39.4

Associated Gene:

Gene:
CSNK1A1
Ensembl Gene ID:
ENSAPLG00000010571
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011075
148311 - 175805
27495