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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_17500749_17501123_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
17500749 - 17501123
Intron Length:
375

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGCTGA
5'SS Class:
strong_major
3'SS Sequence:
CTGTGTGTCACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAGTAAC
U12 Branch Point Sequence:
CATCTAGTAACT
Flanking Amino Acid:
SLGGNSKTMMCANIGPADYN
Intron Amino Acid Position:
322

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.9
0.73
1
67.7
40.2
Major BPS
66.7
0.42
1.2
67.6
36.5
Major PPT
70.5
0.46
1
63.8
41.7
Minor 5ss
43.4
-0.7
2.9
53
46
Minor BPS
46.5
-0.1
2.2
67.34
43.1

Associated Gene:

Gene:
KIF3A
Ensembl Gene ID:
ENSAPLG00000011529
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012166
17491189 - 17505868
14680