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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_17501322_17501711_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
17501322 - 17501711
Intron Length:
390

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCT|GTAAGTAGG
5'SS Class:
major
3'SS Sequence:
GTTTCCTTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCTGAT
U12 Branch Point Sequence:
AATTCCTGATTC
Flanking Amino Acid:
MGKLHLVDLAGSERQAKTGA
Intron Amino Acid Position:
256

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.6
0.56
1.1
66
45.2
Major BPS
78.8
0.71
1
67.6
40.6
Major PPT
85.8
0.8
0.8
77.2
37
Minor 5ss
38
-1.3
2.8
52.4
44.2
Minor BPS
57.1
0.2
1.7
67.22
38.1

Associated Gene:

Gene:
KIF3A
Ensembl Gene ID:
ENSAPLG00000011529
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012166
17491189 - 17505868
14680