Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_17502720_17503210_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

17502720 - 17503210

Intron Length:

491

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTGAGCTGC

5'SS Class:

strong_major

3'SS Sequence:

GTTTCTCTCTTAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

GTCTAAA

U12 Branch Point Sequence:

TCTGTCTAAACT

Flanking Amino Acid:

LGKDQTQRLEVKERPDVGVY

Intron Amino Acid Position:

174

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.8

0.9

69.2

38.5

Major BPS

67.6

0.44

1.2

69.9

35.3

Major PPT

0.65

0.8

77.7

31.1

Minor 5ss

38.8

-1.3

50.2

46.4

Minor BPS

62.1

0.46

1.8

78.66

44.1

Associated Gene:

Gene:

KIF3A

Ensembl Gene ID:

ENSAPLG00000011529

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000012166

17491189 - 17505868

14680