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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_17503296_17503553_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
17503296 - 17503553
Intron Length:
258

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACGGCTT
5'SS Class:
strong_major
3'SS Sequence:
TGTTTGTCTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAC
U12 Branch Point Sequence:
AATATTTTACTA
Flanking Amino Acid:
GHIAKAEGDTRFLVRVSYLE
Intron Amino Acid Position:
145

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.2
0.74
1
73.6
43
Major BPS
77.8
0.69
0.9
69.4
37.3
Major PPT
84
0.77
0.8
81.3
36.4
Minor 5ss
35.6
-1.6
3.7
55.9
48.3
Minor BPS
49.7
-0
1.5
58.76
35.1

Associated Gene:

Gene:
KIF3A
Ensembl Gene ID:
ENSAPLG00000011529
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012166
17491189 - 17505868
14680