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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_17507192_17507726_F

Intron Information:

Intron Rank:
2
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
17507192 - 17507726
Intron Length:
535

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATTCTCT
5'SS Class:
weak_major
3'SS Sequence:
TTCTTCCCCTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTATTTCTAACT
Flanking Amino Acid:
VPIFHHLTLKGTDISPSCYE
Intron Amino Acid Position:
39

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.1
0.52
1.1
66.9
39.1
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
83
0.74
0.7
81.4
23.7
Minor 5ss
59.3
0.31
2.3
74.9
41.1
Minor BPS
67.5
0.63
1.6
85.08
35

Associated Gene:

Gene:
CCNI2
Ensembl Gene ID:
ENSAPLG00000011517
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043063
17507042 - 17515490
8449
ENSAPLT00000028703
17506295 - 17512317
6023
ENSAPLT00000011987
17506295 - 17512317
6023