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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_17511097_17523259_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
17511097 - 17523259
Intron Length:
12163

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTAAGTGAC
5'SS Class:
strong_major
3'SS Sequence:
GTGCTTTCTTTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAT
U12 Branch Point Sequence:
TGATTCCTACCT
Flanking Amino Acid:
QPLRKDKDKKNRSVITGNQS
Intron Amino Acid Position:
476

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.6
0.84
0.9
78.6
28.8
Major BPS
96.4
1.15
0.6
85.7
34.9
Major PPT
75.8
0.58
0.9
73.8
36.9
Minor 5ss
34.7
-1.7
3.2
43.7
38.1
Minor BPS
52.1
0.14
2
74.09
42.3

Associated Gene:

Gene:
SEPTIN8
Ensembl Gene ID:
ENSAPLG00000011252
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020857
17510124 - 17542997
32874
ENSAPLT00000029924
17510124 - 17541118
30995