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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_17511112_17511909_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
17511112 - 17511909
Intron Length:
798

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGAATC
5'SS Class:
strong_major
3'SS Sequence:
TCTGTCTTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATGAT
U12 Branch Point Sequence:
TTATGATGAACT
Flanking Amino Acid:
VITDLLKKAQVTSTEFIYCK
Intron Amino Acid Position:
233

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.7
0.79
1
79
35.3
Major BPS
84.6
0.86
1
74
41.2
Major PPT
85.7
0.8
0.8
79.7
32.4
Minor 5ss
36.6
-1.5
3.3
51.4
45.5
Minor BPS
53.3
0.18
2.1
79.42
41.9

Associated Gene:

Gene:
CCNI2
Ensembl Gene ID:
ENSAPLG00000011517
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011987
17506295 - 17512317
6023
ENSAPLT00000043063
17507042 - 17515490
8449
ENSAPLT00000028703
17506295 - 17512317
6023