About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_17524714_17525098_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
17524714 - 17525098
Intron Length:
385

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGTGC
5'SS Class:
strong_major
3'SS Sequence:
TTGCTTTAACCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GCTTTAA
U12 Branch Point Sequence:
CTTGCTTTAACC
Flanking Amino Acid:
ARQYPWGVVQVENESHCDFV
Intron Amino Acid Position:
312

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.7
0.91
0.9
73.9
38
Major BPS
56.9
0.17
1.3
51.6
43.9
Major PPT
72.3
0.5
1
67
43
Minor 5ss
37.1
-1.5
3.3
50.2
46.4
Minor BPS
74
0.73
1.4
77.59
39

Associated Gene:

Gene:
SEPTIN8
Ensembl Gene ID:
ENSAPLG00000011252
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020857
17510124 - 17542997
32874
ENSAPLT00000011764
17520266 - 17542997
22732
ENSAPLT00000029924
17510124 - 17541118
30995