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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_17533702_17534926_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
17533702 - 17534926
Intron Length:
1225

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTGAGCACA
5'SS Class:
major
3'SS Sequence:
TTCTCCTCCCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTCAA
U12 Branch Point Sequence:
GTGCTGATAACT
Flanking Amino Acid:
QGFSFNILCVGETGIGKSTL
Intron Amino Acid Position:
98

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.4
0.62
1
67.6
39.4
Major BPS
73.1
0.58
1
73.8
32.3
Major PPT
76.5
0.6
0.7
69.8
31
Minor 5ss
33.8
-1.8
2.8
32.8
41.8
Minor BPS
45.9
-0.2
2.2
66.77
43.6

Associated Gene:

Gene:
SEPTIN8
Ensembl Gene ID:
ENSAPLG00000011252
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029924
17510124 - 17541118
30995
ENSAPLT00000020857
17510124 - 17542997
32874
ENSAPLT00000011764
17520266 - 17542997
22732