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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_17535042_17540945_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
17535042 - 17540945
Intron Length:
5904

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGGCTG
5'SS Class:
strong_major
3'SS Sequence:
TTCTCCCTGCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCTAAT
U12 Branch Point Sequence:
CTCTGCTAATCT
Flanking Amino Acid:
LEGRQAAEAENEEKRNLSLG
Intron Amino Acid Position:
21

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.2
0.81
0.9
69.5
42.7
Major BPS
79.3
0.73
1.1
77.9
34.9
Major PPT
75.7
0.58
0.9
69.5
36.8
Minor 5ss
28.9
-2.4
3.3
37.6
47.1
Minor BPS
46.1
-0.2
2.3
66.83
49.8

Associated Gene:

Gene:
SEPTIN8
Ensembl Gene ID:
ENSAPLG00000011252
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029924
17510124 - 17541118
30995