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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_17572305_17598477_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
17572305 - 17598477
Intron Length:
26173

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTCAGTGCA
5'SS Class:
strong_major
3'SS Sequence:
TGTTTTATTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
TTTGTTTTATTT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.6
0.72
1.2
75
35.3
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
83.5
0.75
0.8
82.4
34
Minor 5ss
28.4
-2.5
2.9
33.4
41.6
Minor BPS
59.9
0.39
1.6
78.46
39

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018974
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047002
17563106 - 17598672
35567