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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_17598462_17599398_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
17598462 - 17599398
Intron Length:
937

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGTGTG
5'SS Class:
strong_major
3'SS Sequence:
TTTCCCTTCTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CAATAAC
U12 Branch Point Sequence:
GGTACAATAACT
Flanking Amino Acid:
CKHSHRDLMTGDLHSGDLLF
Intron Amino Acid Position:
144

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.1
0.85
0.9
76.2
39.9
Major BPS
57.8
0.19
1.1
59.6
32.6
Major PPT
86
0.81
0.7
84.5
23.3
Minor 5ss
34.9
-1.7
3.5
48.2
47.9
Minor BPS
51.4
0.12
1.9
73.46
42.1

Associated Gene:

Gene:
GDF9
Ensembl Gene ID:
ENSAPLG00000011242
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011695
17598032 - 17600248
2217