Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_17603939_17614093_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

17603939 - 17614093

Intron Length:

10155

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAAGGCTC

5'SS Class:

strong_major

3'SS Sequence:

GCTGTCTCTCTAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTCTAAT

U12 Branch Point Sequence:

TGAGTTCTAATT

Flanking Amino Acid:

QAEQLSKEQKGTVVEQRQEK

Intron Amino Acid Position:

1129

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

89.5

0.93

0.9

76.9

38.6

Major BPS

94.5

1.11

0.6

92.2

14.6

Major PPT

71.4

0.48

0.9

62.4

39.8

Minor 5ss

35.3

-1.7

3.4

50.1

46.5

Minor BPS

48.7

-0

1.7

65.4

39.7

Associated Gene:

Gene:

AFF4

Ensembl Gene ID:

ENSAPLG00000011166

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000041772

17603249 - 17639631

36383