About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_17605770_17606190_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
17605770 - 17606190
Intron Length:
421

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGTAGA
5'SS Class:
strong_major
3'SS Sequence:
CAATCTGTTTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTGAC
U12 Branch Point Sequence:
TGTGCCACAATC
Flanking Amino Acid:
FLFCSLLLSQMHCASLHQPQ
Intron Amino Acid Position:
57

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
96.3
1.09
0.7
87.1
30
Major BPS
68.9
0.47
1
59.2
39.1
Major PPT
73
0.52
1
69.2
41.2
Minor 5ss
35.1
-1.7
2.7
42.8
44
Minor BPS
49.2
-0
1.9
64.53
41

Associated Gene:

Gene:
LEAP2
Ensembl Gene ID:
ENSAPLG00000011235
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011688
17605602 - 17607255
1654