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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_17607257_17614093_R

Intron Information:

Intron Rank:
20
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
17607257 - 17614093
Intron Length:
6837

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGCTC
5'SS Class:
strong_major
3'SS Sequence:
TTCATTATGACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTCAT
U12 Branch Point Sequence:
GTGTTCTTCATT
Flanking Amino Acid:
QAEQLSKEQKGHSEADLRKQ
Intron Amino Acid Position:
1129

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.5
0.93
0.9
76.9
38.6
Major BPS
87.4
0.93
0.9
87.9
29.5
Major PPT
72.8
0.51
1
69.1
40.6
Minor 5ss
35.3
-1.7
3.4
50.1
46.5
Minor BPS
60.6
0.41
1.7
75.75
41.6

Associated Gene:

Gene:
AFF4
Ensembl Gene ID:
ENSAPLG00000011166
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034499
17603249 - 17639631
36383