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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_17622476_17623930_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
17622476 - 17623930
Intron Length:
1455

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGATGACT
5'SS Class:
major
3'SS Sequence:
TTGCTTTATTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAGACAT
U12 Branch Point Sequence:
TTTGCTTTATTC
Flanking Amino Acid:
STKGKRKHKQNEDENRASES
Intron Amino Acid Position:
777

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.2
0.64
1
74.1
35.9
Major BPS
59.8
0.24
1.2
67
39.8
Major PPT
82.2
0.72
0.9
81.3
35.4
Minor 5ss
29.5
-2.3
3.1
41
45
Minor BPS
62.5
0.37
1.7
73.5
38.4

Associated Gene:

Gene:
AFF4
Ensembl Gene ID:
ENSAPLG00000011166
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039108
17611352 - 17639627
28276
ENSAPLT00000034499
17603249 - 17639631
36383
ENSAPLT00000011682
17607752 - 17639631
31880
ENSAPLT00000045366
17612756 - 17639631
26876
ENSAPLT00000041772
17603249 - 17639631
36383