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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_17625563_17625929_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
17625563 - 17625929
Intron Length:
367

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGCATT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTGTTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTTAT
U12 Branch Point Sequence:
TTTTCCTCATTT
Flanking Amino Acid:
DKTVPRSTPGSNSEPSQHNS
Intron Amino Acid Position:
416

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.3
0.78
1
81.8
38.5
Major BPS
83.9
0.84
1
73.9
41.3
Major PPT
93.6
0.98
0.7
92.3
26.6
Minor 5ss
43.9
-0.7
3.2
65.5
45.8
Minor BPS
68.1
0.65
1.8
88.32
37.1

Associated Gene:

Gene:
AFF4
Ensembl Gene ID:
ENSAPLG00000011166
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039108
17611352 - 17639627
28276
ENSAPLT00000034499
17603249 - 17639631
36383
ENSAPLT00000011682
17607752 - 17639631
31880
ENSAPLT00000045366
17612756 - 17639631
26876
ENSAPLT00000041772
17603249 - 17639631
36383