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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_17627040_17627594_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
17627040 - 17627594
Intron Length:
555

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGA|GTAAGATGT
5'SS Class:
major
3'SS Sequence:
CTTTTACTTACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTTAC
U12 Branch Point Sequence:
TTTTACTTACAG
Flanking Amino Acid:
QSKSCESNQTDMLKDDLKLS
Intron Amino Acid Position:
385

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.7
0.51
1.1
66.2
40.6
Major BPS
74.2
0.6
1
67
39.4
Major PPT
86.9
0.83
0.7
80.8
30.1
Minor 5ss
40.9
-1
3.1
53
44.8
Minor BPS
57
0.08
2
69.83
43

Associated Gene:

Gene:
AFF4
Ensembl Gene ID:
ENSAPLG00000011166
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011682
17607752 - 17639631
31880
ENSAPLT00000045366
17612756 - 17639631
26876
ENSAPLT00000041772
17603249 - 17639631
36383
ENSAPLT00000039108
17611352 - 17639627
28276
ENSAPLT00000034499
17603249 - 17639631
36383