About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_17627616_17628940_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
17627616 - 17628940
Intron Length:
1325

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATC|GTAAGTAGC
5'SS Class:
major
3'SS Sequence:
TTTCTTTTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
AGACTTTTAATC
Flanking Amino Acid:
SKTSNGHQSKSCESNQTDML
Intron Amino Acid Position:
378

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.2
0.5
1.3
68.8
42.2
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
94.6
1
0.6
88.2
29.1
Minor 5ss
37.6
-1.4
2.7
46.5
36
Minor BPS
58
0.23
1.2
59.41
33.1

Associated Gene:

Gene:
AFF4
Ensembl Gene ID:
ENSAPLG00000011166
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039108
17611352 - 17639627
28276
ENSAPLT00000034499
17603249 - 17639631
36383
ENSAPLT00000011682
17607752 - 17639631
31880
ENSAPLT00000045366
17612756 - 17639631
26876
ENSAPLT00000041772
17603249 - 17639631
36383