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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_17635792_17636760_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
17635792 - 17636760
Intron Length:
969

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGTTCT
5'SS Class:
strong_major
3'SS Sequence:
TGTTTTGGTACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTAAT
U12 Branch Point Sequence:
GTTTTGTTAATA
Flanking Amino Acid:
DVSCVDEILKEMSHSWPPPL
Intron Amino Acid Position:
321

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.1
0.87
0.9
84.2
27.2
Major BPS
84.4
0.85
1
84
34.5
Major PPT
77.3
0.61
1
72.2
42.7
Minor 5ss
44.5
-0.6
2.8
60
38.4
Minor BPS
62.5
0.39
2
75.34
36.5

Associated Gene:

Gene:
AFF4
Ensembl Gene ID:
ENSAPLG00000011166
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034499
17603249 - 17639631
36383
ENSAPLT00000011682
17607752 - 17639631
31880
ENSAPLT00000045366
17612756 - 17639631
26876
ENSAPLT00000041772
17603249 - 17639631
36383
ENSAPLT00000039108
17611352 - 17639627
28276