About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_17636806_17638144_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
17636806 - 17638144
Intron Length:
1339

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAT|GTAAGTTCC
5'SS Class:
strong_major
3'SS Sequence:
TTTTGATTTGTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTGAT
U12 Branch Point Sequence:
TTAATCTTGAGT
Flanking Amino Acid:
KLKIPSQPLDASASGDVSCV
Intron Amino Acid Position:
306

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.9
0.8
1
77.9
30.9
Major BPS
96.4
1.15
0.6
85.7
34.9
Major PPT
82.9
0.74
0.8
78.1
35.3
Minor 5ss
43.9
-0.7
2.7
58.7
38.8
Minor BPS
58.9
0.36
1.7
76.12
40.6

Associated Gene:

Gene:
AFF4
Ensembl Gene ID:
ENSAPLG00000011166
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034499
17603249 - 17639631
36383
ENSAPLT00000011682
17607752 - 17639631
31880
ENSAPLT00000045366
17612756 - 17639631
26876
ENSAPLT00000041772
17603249 - 17639631
36383
ENSAPLT00000039108
17611352 - 17639627
28276