About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_17638937_17639504_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
17638937 - 17639504
Intron Length:
568

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTT|GTGAGTTTA
5'SS Class:
major
3'SS Sequence:
ATGATTTTCACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAC
U12 Branch Point Sequence:
TTTTCTCTAATG
Flanking Amino Acid:
SPLFAEPYKVTSKEDKLSSR
Intron Amino Acid Position:
42

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.1
0.57
1
74.9
30.5
Major BPS
89.7
0.98
0.7
89.9
20
Major PPT
74.9
0.56
0.9
68.7
41.4
Minor 5ss
40.9
-1
3
55
43.6
Minor BPS
68.1
0.43
1.7
75.83
36.2

Associated Gene:

Gene:
AFF4
Ensembl Gene ID:
ENSAPLG00000011166
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011682
17607752 - 17639631
31880
ENSAPLT00000045366
17612756 - 17639631
26876
ENSAPLT00000041772
17603249 - 17639631
36383
ENSAPLT00000039108
17611352 - 17639627
28276
ENSAPLT00000034499
17603249 - 17639631
36383