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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_17658130_17661621_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
17658130 - 17661621
Intron Length:
3492

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACGTGGG
5'SS Class:
strong_major
3'SS Sequence:
TGTTTTCTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTCAT
U12 Branch Point Sequence:
CTGTTCTCATCT
Flanking Amino Acid:
STAERKTKKKRSKSVTSSSS
Intron Amino Acid Position:
82

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.6
0.79
1
67.3
44.3
Major BPS
94.9
1.12
0.6
93.9
14.7
Major PPT
90.7
0.92
0.7
88.9
28.1
Minor 5ss
31
-2.2
3.3
40.6
45.6
Minor BPS
52.6
0.16
1.9
71.34
45.8

Associated Gene:

Gene:
ZCCHC10
Ensembl Gene ID:
ENSAPLG00000002623
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002641
17656644 - 17666356
9713