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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_17675094_17677875_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
17675094 - 17677875
Intron Length:
2782

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCC|GTGAGTGGG
5'SS Class:
major
3'SS Sequence:
GTTCTTGTTCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATCAAT
U12 Branch Point Sequence:
TTGCTACCAATC
Flanking Amino Acid:
VANEYSDRSTPSCIAFGPKN
Intron Amino Acid Position:
36

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
62.9
0.31
1.3
54.4
44.7
Major BPS
69.1
0.47
1.2
77
34.1
Major PPT
77.2
0.61
0.9
69.4
41.7
Minor 5ss
28.5
-2.5
3.1
35.7
41.3
Minor BPS
41.8
-0.6
1.9
53.8
37.8

Associated Gene:

Gene:
HSPA4
Ensembl Gene ID:
ENSAPLG00000002687
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002753
17674987 - 17690317
15331