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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_17679647_17680261_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
17679647 - 17680261
Intron Length:
615

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGTCTG
5'SS Class:
strong_major
3'SS Sequence:
TTTCTATTTGAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTCTAT
U12 Branch Point Sequence:
TTCTATTTGAAG
Flanking Amino Acid:
QLPTGSTGIKVMYMEEERNF
Intron Amino Acid Position:
103

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
94.8
1.06
0.8
81.8
38.5
Major BPS
73.8
0.59
1.3
72.8
43
Major PPT
78.3
0.64
1
79.7
31.4
Minor 5ss
37.8
-1.4
3
49.5
46.7
Minor BPS
51.3
-0.1
1.7
60.29
41.8

Associated Gene:

Gene:
HSPA4
Ensembl Gene ID:
ENSAPLG00000002687
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002753
17674987 - 17690317
15331