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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_17680385_17680849_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
17680385 - 17680849
Intron Length:
465

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCG|GTAAGTATG
5'SS Class:
strong_major
3'SS Sequence:
GATCTTCTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTAAT
U12 Branch Point Sequence:
TAATAATGAATA
Flanking Amino Acid:
KKPVVDCVVSVPCFYTDAER
Intron Amino Acid Position:
144

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.2
0.9
0.9
82.1
37.7
Major BPS
94.5
1.11
0.6
92.2
14.6
Major PPT
80
0.67
0.9
73.4
36.7
Minor 5ss
39.8
-1.1
2.8
52.3
44.3
Minor BPS
48.1
-0.1
1.8
61.32
37.8

Associated Gene:

Gene:
HSPA4
Ensembl Gene ID:
ENSAPLG00000002687
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002753
17674987 - 17690317
15331