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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_17683689_17683998_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
17683689 - 17683998
Intron Length:
310

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCA|GTAAGTGTG
5'SS Class:
major
3'SS Sequence:
GACTCCTTTCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTCAA
U12 Branch Point Sequence:
TATTCAATAAAC
Flanking Amino Acid:
APLRSVLEQAKLKKEDIYAV
Intron Amino Acid Position:
329

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.5
0.62
1
70.3
40.5
Major BPS
83
0.82
0.8
83.9
25.3
Major PPT
71.2
0.48
0.9
62
39.5
Minor 5ss
38.5
-1.3
3.3
54.8
43.4
Minor BPS
54.3
0.12
2
71.88
38

Associated Gene:

Gene:
HSPA4
Ensembl Gene ID:
ENSAPLG00000002687
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002753
17674987 - 17690317
15331