About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_17684151_17685126_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
17684151 - 17685126
Intron Length:
976

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAAAGT
5'SS Class:
strong_major
3'SS Sequence:
TTTGTTCTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATATAAC
U12 Branch Point Sequence:
ATTTCTGTAATA
Flanking Amino Acid:
EAVARGCALQCAILSPAFKV
Intron Amino Acid Position:
380

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.9
0.78
0.9
77.9
36.7
Major BPS
69.1
0.48
1
70
32.1
Major PPT
90.7
0.92
0.7
88.9
28.1
Minor 5ss
34.5
-1.8
3.1
49.5
46.3
Minor BPS
63.7
0.43
2
77.18
34.1

Associated Gene:

Gene:
HSPA4
Ensembl Gene ID:
ENSAPLG00000002687
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002753
17674987 - 17690317
15331