About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_17689242_17689641_F

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
17689242 - 17689641
Intron Length:
400

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATTTCCA
5'SS Class:
major
3'SS Sequence:
TAACCTGTTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTTAT
U12 Branch Point Sequence:
AAGTACTTATTT
Flanking Amino Acid:
MKTVHAFKAKDEQYDHLDEA
Intron Amino Acid Position:
720

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76
0.61
1
66.1
39.2
Major BPS
83.6
0.84
0.8
71.9
35.8
Major PPT
73.1
0.52
1
69.4
41.1
Minor 5ss
40.7
-1
2.7
51.5
44.8
Minor BPS
53.3
0.18
1.8
68.65
42.2

Associated Gene:

Gene:
HSPA4
Ensembl Gene ID:
ENSAPLG00000002687
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002753
17674987 - 17690317
15331