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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_17689804_17690041_F

Intron Information:

Intron Rank:
18
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
17689804 - 17690041
Intron Length:
238

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGTCTT
5'SS Class:
strong_major
3'SS Sequence:
ATTTCCTTCCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
TGTTCTTTAACT
Flanking Amino Acid:
KAKDIQAKTKELTSICNPIV
Intron Amino Acid Position:
774

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87
0.87
0.9
84.6
33.2
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
77.6
0.62
0.8
70.3
35.7
Minor 5ss
41.9
-0.9
3.1
59.6
38.8
Minor BPS
88.8
1.3
0.9
96.8
27.8

Associated Gene:

Gene:
HSPA4
Ensembl Gene ID:
ENSAPLG00000002687
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002753
17674987 - 17690317
15331