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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_17694163_17694576_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
17694163 - 17694576
Intron Length:
414

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATGCGG
5'SS Class:
major
3'SS Sequence:
GCTCTTTGCTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAA
U12 Branch Point Sequence:
ATGCACATAATC
Flanking Amino Acid:
KCSSVATPGQVKELVGEQLF
Intron Amino Acid Position:
279

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.5
0.6
1.1
57.1
47.2
Major BPS
82
0.79
0.8
83.7
25.7
Major PPT
69.4
0.44
0.9
68.7
37.2
Minor 5ss
30.2
-2.3
3.2
39.1
46
Minor BPS
48.9
-0.1
1.8
60.59
38.2

Associated Gene:

Gene:
RNF14
Ensembl Gene ID:
ENSAPLG00000003900
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004011
17692478 - 17697482
5005