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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_17694806_17695413_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
17694806 - 17695413
Intron Length:
608

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTCAT
5'SS Class:
strong_major
3'SS Sequence:
TTCTACTCCTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTTAT
U12 Branch Point Sequence:
TGTTGTTTATTC
Flanking Amino Acid:
HGVSPCKVTAEKLMDLRNEY
Intron Amino Acid Position:
355

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.8
0.98
0.7
83.1
30.9
Major BPS
81.3
0.78
1.1
71.7
44.6
Major PPT
79.5
0.66
0.8
77.3
31.1
Minor 5ss
30.4
-2.2
2.9
40.4
45.7
Minor BPS
51.4
0.02
2
66.4
40

Associated Gene:

Gene:
RNF14
Ensembl Gene ID:
ENSAPLG00000003900
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004011
17692478 - 17697482
5005