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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_17695587_17696168_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
17695587 - 17696168
Intron Length:
582

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGCGTG
5'SS Class:
strong_major
3'SS Sequence:
TTTTCCCTGCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGTTAT
U12 Branch Point Sequence:
ATTTTGTTATTG
Flanking Amino Acid:
SCPCCGTPIEKLDGCNKMTC
Intron Amino Acid Position:
413

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.9
0.82
0.9
72.2
39.5
Major BPS
81.3
0.78
1.1
71.7
44.6
Major PPT
79.7
0.67
0.9
73.9
36.8
Minor 5ss
34.5
-1.8
3.4
45.9
49.3
Minor BPS
48
-0.2
2.3
60.73
42

Associated Gene:

Gene:
RNF14
Ensembl Gene ID:
ENSAPLG00000003900
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004011
17692478 - 17697482
5005