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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_17701061_17701342_R

Intron Information:

Intron Rank:
5
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
17701061 - 17701342
Intron Length:
282

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGTGTT
5'SS Class:
strong_major
3'SS Sequence:
CCCGCTACATTAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTTTTAC
U12 Branch Point Sequence:
ATCTTTTTACCC
Flanking Amino Acid:
LKVKTVKYFKGLMLVHNKLV
Intron Amino Acid Position:
257

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
94.1
1.04
0.7
90.4
20.6
Major BPS
86.6
0.91
0.8
77.7
36.7
Major PPT
57.7
0.17
0.9
55.7
33.6
Minor 5ss
33.2
-1.9
3.4
48.7
47.5
Minor BPS
59.7
0.28
1.6
67.42
38.9

Associated Gene:

Gene:
GNPDA1
Ensembl Gene ID:
ENSAPLG00000004003
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004123
17700151 - 17704595
4445