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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_17717169_17718409_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
17717169 - 17718409
Intron Length:
1241

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAACGTG
5'SS Class:
major
3'SS Sequence:
TTTCTCATTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTCAT
U12 Branch Point Sequence:
TTCTGTATAACT
Flanking Amino Acid:
PYSSISAESTAYFDYKDESG
Intron Amino Acid Position:
82

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.8
0.7
1
69.5
41.5
Major BPS
94.9
1.12
0.6
93.9
14.7
Major PPT
87
0.83
0.7
81.8
28.4
Minor 5ss
39.3
-1.2
3.5
55
49.2
Minor BPS
57.2
0.31
2
80.33
41.9

Associated Gene:

Gene:
NDFIP1
Ensembl Gene ID:
ENSAPLG00000004156
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004286
17716371 - 17722557
6187