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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_17719593_17719773_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
17719593 - 17719773
Intron Length:
181

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCA|GTAAGTACA
5'SS Class:
major
3'SS Sequence:
CTTGCTTTCTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATATAAA
U12 Branch Point Sequence:
GCTTGATCATCT
Flanking Amino Acid:
NDGIFMLTFFMAFLFNWIGF
Intron Amino Acid Position:
155

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.6
0.65
1
74.8
35.3
Major BPS
69.8
0.49
1
70.3
31.8
Major PPT
82
0.72
0.8
80.1
31.9
Minor 5ss
38.2
-1.3
2.7
49.5
40.3
Minor BPS
42.1
-0.5
2.3
62.13
47.2

Associated Gene:

Gene:
NDFIP1
Ensembl Gene ID:
ENSAPLG00000004156
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004286
17716371 - 17722557
6187