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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_17719899_17721775_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
17719899 - 17721775
Intron Length:
1877

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAGTTGT
5'SS Class:
strong_major
3'SS Sequence:
ATTTTTTTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGTAAT
U12 Branch Point Sequence:
TGTGCTTTAACT
Flanking Amino Acid:
SLIKWILIVRFSTYFPGYFD
Intron Amino Acid Position:
197

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.8
0.87
0.9
78.8
38.3
Major BPS
84.4
0.85
1.1
84
34.5
Major PPT
93.9
0.99
0.6
92.8
24.8
Minor 5ss
41.5
-0.9
2.9
50
46.3
Minor BPS
78.2
0.96
1.3
88.47
36.7

Associated Gene:

Gene:
NDFIP1
Ensembl Gene ID:
ENSAPLG00000004156
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004286
17716371 - 17722557
6187