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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_17776268_17791980_F

Intron Information:

Intron Rank:
124943
Intron Class:
major
Intron Phase:
Intron Coordinates:
17776268 - 17791980
Intron Length:
15713

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGTGCC
5'SS Class:
strong_major
3'SS Sequence:
TTTTGTTTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TTTTATTGGATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.8
0.96
0.8
78.4
29.1
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
91.8
0.94
0.7
84.6
36
Minor 5ss
28.5
-2.5
3
35.5
41.2
Minor BPS
58.2
0.34
1.7
80.51
35.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017281
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035280
17775964 - 17793082
17119