About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_17810351_17813734_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
17810351 - 17813734
Intron Length:
3384

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTAAGCACA
5'SS Class:
major
3'SS Sequence:
TTTTTACTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAC
U12 Branch Point Sequence:
TTATTTTTACTT
Flanking Amino Acid:
DGTRDRSDQHIQLQLSAESV
Intron Amino Acid Position:
57

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.9
0.49
1.1
65.7
40.1
Major BPS
86.6
0.91
0.8
77.7
36.7
Major PPT
91.7
0.94
0.7
89.8
25.4
Minor 5ss
41.9
-0.9
2.8
55.8
42.2
Minor BPS
64.3
0.53
1.5
79.64
37.1

Associated Gene:

Gene:
FGF1
Ensembl Gene ID:
ENSAPLG00000006784
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007040
17809224 - 17813903
4680